Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sama_0782 | sfsA | Sama_0782 | Sama_0781 | PepB aminopeptidase. Metallo peptidase. MEROPS family M17; Probably plays an important role in intracellular peptide degradation. | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | 0.472 |
Sama_2490 | sfsA | Sama_2490 | Sama_0781 | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | 0.940 |
ackA | sfsA | Sama_1495 | Sama_0781 | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | 0.613 |
dksA | gluQ | Sama_0780 | Sama_0779 | Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | glutamyl-tRNA synthetase domain protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | 0.660 |
dksA | sfsA | Sama_0780 | Sama_0781 | Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | 0.597 |
gluQ | dksA | Sama_0779 | Sama_0780 | glutamyl-tRNA synthetase domain protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | 0.660 |
gluQ | sfsA | Sama_0779 | Sama_0781 | glutamyl-tRNA synthetase domain protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | 0.574 |
proA | sfsA | Sama_2515 | Sama_0781 | Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | 0.521 |
sfsA | Sama_0782 | Sama_0781 | Sama_0782 | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | PepB aminopeptidase. Metallo peptidase. MEROPS family M17; Probably plays an important role in intracellular peptide degradation. | 0.472 |
sfsA | Sama_2490 | Sama_0781 | Sama_2490 | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs. | 0.940 |
sfsA | ackA | Sama_0781 | Sama_1495 | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | Acetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. | 0.613 |
sfsA | dksA | Sama_0781 | Sama_0780 | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | Transcriptional regulator, TraR/DksA family; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | 0.597 |
sfsA | gluQ | Sama_0781 | Sama_0779 | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | glutamyl-tRNA synthetase domain protein; Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2- cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon; Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily. | 0.574 |
sfsA | proA | Sama_0781 | Sama_2515 | KEGG: sdn:Sden_3169 sugar fermentation stimulation protein; Belongs to the SfsA family. | Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.521 |