STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1194Oxidoreductase, Gfo/Idh/MocA family; Glycosidase. (455 aa)    
Predicted Functional Partners:
Sama_1196
KEGG: vvy:VVA1515 predicted phosphosugar isomerase.
 
     0.841
Sama_1197
N-acetylglucosamine kinase; KEGG: spt:SPA1630 putative ROK-family protein.
 
   
 0.832
Sama_1193
KEGG: vfi:VFA1006 transcriptional regulator, GlpR family.
 
  
 0.822
Sama_1195
Tagatose-bisphosphate aldolase noncatalytic subunit; KEGG: shm:Shewmr7_2601 tagatose-6-phosphate kinase.
 
     0.818
Sama_1198
KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
    0.810
Sama_0536
Galactokinase; KEGG: son:SO0694 galactokinase; Belongs to the GHMP kinase family. GalK subfamily.
 
 
 0.775
Sama_0293
KEGG: pat:Patl_0120 putative alpha-1,2-mannosidase.
 
     0.706
Sama_0268
KEGG: son:SO0363 hypothetical protein.
 
    0.676
Sama_0947
KEGG: son:SO3504 hypothetical protein.
  
     0.671
Sama_0288
KEGG: pat:Patl_0116 putative alpha-1,2-mannosidase.
 
     0.650
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.