STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_1199KEGG: sde:Sde_3038 multiple antibiotic resistance (MarC)-related proteins. (438 aa)    
Predicted Functional Partners:
Sama_1198
KEGG: son:SO3505 N-acetylglucosamine-6-phosphate deacetylase; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
   
 0.656
Sama_1194
Oxidoreductase, Gfo/Idh/MocA family; Glycosidase.
  
    0.598
Sama_1197
N-acetylglucosamine kinase; KEGG: spt:SPA1630 putative ROK-family protein.
  
  
 0.589
Sama_1196
KEGG: vvy:VVA1515 predicted phosphosugar isomerase.
     
 0.588
Sama_1195
Tagatose-bisphosphate aldolase noncatalytic subunit; KEGG: shm:Shewmr7_2601 tagatose-6-phosphate kinase.
       0.576
Sama_1193
KEGG: vfi:VFA1006 transcriptional regulator, GlpR family.
  
    0.550
Sama_1531
Dihydrodipicolinate synthetase family protein; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
  
 0.484
Sama_0937
KEGG: son:SO3516 transcriptional regulator, LacI family.
 
   
 0.479
Sama_1192
KEGG: cps:CPS_0238 TonB-dependent receptor.
 
    0.423
Sama_1399
KEGG: sdn:Sden_2610 TonB-dependent receptor.
  
  
 0.405
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.