STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimK1KEGG: son:SO2270 ribosomal protein S6 modification protein. (301 aa)    
Predicted Functional Partners:
Sama_1092
KEGG: son:SO1583 hypothetical protein.
 
     0.766
Sama_1956
KEGG: sdn:Sden_2273 protein of unknown function DUF785.
 
     0.657
Sama_1847
KEGG: sdn:Sden_1891 protein of unknown function DUF785.
 
     0.651
hscA
Chaperone protein HscA; Chaperone involved in the maturation of iron-sulfur cluster- containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.
     
 0.476
Sama_1300
KEGG: sfr:Sfri_2114 hypothetical protein.
       0.472
Sama_1298
KEGG: son:SO2269 ferredoxin, 2Fe-2S.
       0.470
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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