STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_2022Carboxylesterase; KEGG: sdn:Sden_2138 carboxylesterase. (226 aa)    
Predicted Functional Partners:
Sama_2023
KEGG: sdn:Sden_2139 hypothetical protein.
       0.774
Sama_0068
Molybdopterin adenylyltransferase; KEGG: son:SO0065 molybdenum cofactor biosynthesis protein Mog.
 
    0.677
Sama_2024
Hypothetical protein; KEGG: bce:BC1379 gentamicin resistance protein.
       0.570
Sama_2708
KEGG: pca:Pcar_1086 conserved hypothetical signal peptide protein.
     
 0.547
Sama_0278
Endonuclease; KEGG: rfr:Rfer_3072 endonuclease.
   
 0.532
Sama_2136
KEGG: vch:VC0600 hypothetical protein.
     
 0.521
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.