node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sama_0014 | Sama_0333 | Sama_0014 | Sama_0333 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | 0.757 |
Sama_0014 | Sama_1250 | Sama_0014 | Sama_1250 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: son:SO1820 DNA polymerase II. | 0.974 |
Sama_0014 | Sama_2042 | Sama_0014 | Sama_2042 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | KEGG: son:SO2612 DNA polymerase III, delta prime subunit. | 0.997 |
Sama_0014 | Sama_2080 | Sama_0014 | Sama_2080 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | Helicase; KEGG: son:SO2744 helicase. | 0.412 |
Sama_0014 | mutS | Sama_0014 | Sama_1045 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.956 |
Sama_0014 | recA | Sama_0014 | Sama_1046 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.878 |
Sama_0014 | xni | Sama_0014 | Sama_2420 | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 5'-3' exonuclease; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. | 0.919 |
Sama_0333 | Sama_0014 | Sama_0333 | Sama_0014 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.757 |
Sama_0333 | Sama_1012 | Sama_0333 | Sama_1012 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | KEGG: son:SO3480 hypothetical protein phosphatase. | 0.866 |
Sama_0333 | Sama_1250 | Sama_0333 | Sama_1250 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | KEGG: son:SO1820 DNA polymerase II. | 0.540 |
Sama_0333 | Sama_2042 | Sama_0333 | Sama_2042 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | KEGG: son:SO2612 DNA polymerase III, delta prime subunit. | 0.765 |
Sama_0333 | mutS | Sama_0333 | Sama_1045 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity. | 0.771 |
Sama_0333 | recA | Sama_0333 | Sama_1046 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.906 |
Sama_0333 | sbcD | Sama_0333 | Sama_1267 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | Exodeoxyribonuclease I subunit D; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.902 |
Sama_0333 | xni | Sama_0333 | Sama_2420 | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | 5'-3' exonuclease; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. | 0.886 |
Sama_1012 | Sama_0333 | Sama_1012 | Sama_0333 | KEGG: son:SO3480 hypothetical protein phosphatase. | KEGG: son:SO4241 ATP-dependent DNA helicase RecQ. | 0.866 |
Sama_1012 | Sama_1250 | Sama_1012 | Sama_1250 | KEGG: son:SO3480 hypothetical protein phosphatase. | KEGG: son:SO1820 DNA polymerase II. | 0.472 |
Sama_1012 | Sama_2042 | Sama_1012 | Sama_2042 | KEGG: son:SO3480 hypothetical protein phosphatase. | KEGG: son:SO2612 DNA polymerase III, delta prime subunit. | 0.539 |
Sama_1012 | recA | Sama_1012 | Sama_1046 | KEGG: son:SO3480 hypothetical protein phosphatase. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.635 |
Sama_1012 | xni | Sama_1012 | Sama_2420 | KEGG: son:SO3480 hypothetical protein phosphatase. | 5'-3' exonuclease; Has flap endonuclease activity. During DNA replication, flap endonucleases cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment. | 0.810 |