Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sama_0145 | Sama_2741 | Sama_0145 | Sama_2741 | KEGG: son:SO0145 hypothetical URI domain endonuclease. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.592 |
Sama_0145 | rsmI | Sama_0145 | Sama_3353 | KEGG: son:SO0145 hypothetical URI domain endonuclease. | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.538 |
Sama_2740 | Sama_2741 | Sama_2740 | Sama_2741 | Branched-chain amino acid transport system II carrier protein BrnQ; Component of the transport system for branched-chain amino acids. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.442 |
Sama_2741 | Sama_0145 | Sama_2741 | Sama_0145 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | KEGG: son:SO0145 hypothetical URI domain endonuclease. | 0.592 |
Sama_2741 | Sama_2740 | Sama_2741 | Sama_2740 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Branched-chain amino acid transport system II carrier protein BrnQ; Component of the transport system for branched-chain amino acids. | 0.442 |
Sama_2741 | rlmL | Sama_2741 | Sama_1600 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Putative N-6 adenine-specific DNA methylase / putative SAM-dependent methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | 0.444 |
Sama_2741 | rsmI | Sama_2741 | Sama_3353 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | 0.573 |
Sama_2741 | slyX | Sama_2741 | Sama_0640 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | KEGG: son:SO1063 SlyX protein; Belongs to the SlyX family. | 0.466 |
Sama_2741 | srmB | Sama_2741 | Sama_2742 | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | Superfamily II DNA and RNA helicase-like protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily. | 0.602 |
rlmL | Sama_2741 | Sama_1600 | Sama_2741 | Putative N-6 adenine-specific DNA methylase / putative SAM-dependent methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.444 |
rsmI | Sama_0145 | Sama_3353 | Sama_0145 | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | KEGG: son:SO0145 hypothetical URI domain endonuclease. | 0.538 |
rsmI | Sama_2741 | Sama_3353 | Sama_2741 | Protein of unknown function UPF0011; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.573 |
slyX | Sama_2741 | Sama_0640 | Sama_2741 | KEGG: son:SO1063 SlyX protein; Belongs to the SlyX family. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.466 |
srmB | Sama_2741 | Sama_2742 | Sama_2741 | Superfamily II DNA and RNA helicase-like protein; DEAD-box RNA helicase involved in the assembly of the 50S ribosomal subunit at low temperature. Exhibits RNA-stimulated ATP hydrolysis and RNA unwinding activity; Belongs to the DEAD box helicase family. SrmB subfamily. | Conserved hypothetical protein; Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC). | 0.602 |