STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3135KEGG: son:SO0572 enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. (268 aa)    
Predicted Functional Partners:
fadA
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.910
Sama_1375
KEGG: son:SO1677 acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.859
fadI
3-ketoacyl-CoA thiolase; Catalyzes the final step of fatty acid oxidation in which acetyl-CoA is released and the CoA ester of a fatty acid two carbons shorter is formed.
 
 0.847
Sama_1377
KEGG: son:SO1679 acyl-CoA dehydrogenase family protein.
 
 0.808
Sama_3129
KEGG: son:SO0577 sensory box histidine kinase/response regulator.
  
 
 0.796
Sama_0747
Signal transduction histidine kinase-like protein; KEGG: xcb:XC_1756 two-component system sensor protein.
   
 
 0.784
Sama_1362
KEGG: son:SO1897 isovaleryl-CoA dehydrogenase.
 
 0.775
Sama_0067
Hpt sensor hybrid histidine kinase; KEGG: hch:HCH_00809 signal transduction histidine kinase.
  
 
 0.773
Sama_2078
KEGG: son:SO2742 sensor histidine kinase/response regulator.
  
 
 0.770
Sama_2952
KEGG: son:SO0859 sensory box histidine kinase/response regulator.
   
 
 0.770
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.