STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sama_3493annotation not available (93 aa)    
Predicted Functional Partners:
Sama_3494
Response regulator receiver protein; KEGG: hch:HCH_00454 FOG: CheY-like receiver
       0.811
Sama_3495
CheA signal transduction histidine kinase; KEGG: hch:HCH_00455 chemotaxis protein histidine kinase and related kinase
       0.755
Sama_3496
KEGG: sde:Sde_3106 biotin synthase
       0.721
Sama_3497
Putative methyl-accepting chemotaxis sensory transducer; KEGG: cvi:CV3438 probable methyl-accepting chemotaxis protein
       0.642
Sama_3492
KEGG: sdn:Sden_3525 electron transport protein SCO1/SenC
       0.492
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group; Belongs to the UbiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily
       0.490
Sama_3489
KEGG: son:SO4612 hypothetical protein
       0.473
Sama_3490
KEGG: sdn:Sden_3523 cytochrome oxidase assembly
       0.473
Sama_3498
Chemotaxis protein methyltransferase; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
       0.445
Sama_3499
Chemotaxis response regulator protein-glutamate methylesterase; Involved in the modulation of the chemotaxis system; catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins) by CheR
       0.445
Your Current Organism:
Shewanella amazonensis
NCBI taxonomy Id: 326297
Other names: S. amazonensis SB2B, Shewanella amazonensis, Shewanella amazonensis SB2B, Shewanella amazonensis str. SB2B, Shewanella amazonensis strain SB2B
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