Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Sama_1271 | Sama_2620 | Sama_1271 | Sama_2620 | KEGG: son:SO2840 hypothetical protein. | KEGG: sdn:Sden_0737 protein of unknown function DUF1456. | 0.589 |
Sama_1271 | rlmF | Sama_1271 | Sama_3621 | KEGG: son:SO2840 hypothetical protein. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.528 |
Sama_2620 | Sama_1271 | Sama_2620 | Sama_1271 | KEGG: sdn:Sden_0737 protein of unknown function DUF1456. | KEGG: son:SO2840 hypothetical protein. | 0.589 |
Sama_2620 | rlmF | Sama_2620 | Sama_3621 | KEGG: sdn:Sden_0737 protein of unknown function DUF1456. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.438 |
Sama_3622 | rlmF | Sama_3622 | Sama_3621 | Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.725 |
Sama_3622 | ubiC | Sama_3622 | Sama_3623 | Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.596 |
rlmF | Sama_1271 | Sama_3621 | Sama_1271 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | KEGG: son:SO2840 hypothetical protein. | 0.528 |
rlmF | Sama_2620 | Sama_3621 | Sama_2620 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | KEGG: sdn:Sden_0737 protein of unknown function DUF1456. | 0.438 |
rlmF | Sama_3622 | Sama_3621 | Sama_3622 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.725 |
rlmF | ubiC | Sama_3621 | Sama_3623 | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | 0.509 |
ubiC | Sama_3622 | Sama_3623 | Sama_3622 | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | Flagellar protein FliL, putative; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family. | 0.596 |
ubiC | rlmF | Sama_3623 | Sama_3621 | Chorismate lyase; Removes the pyruvyl group from chorismate, with concomitant aromatization of the ring, to provide 4-hydroxybenzoate (4HB) for the ubiquinone pathway; Belongs to the UbiC family. | Protein of unknown function DUF890; Specifically methylates the adenine in position 1618 of 23S rRNA. | 0.509 |