STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL3861Putative glycolate oxidoreductase (partial match); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme. (492 aa)    
Predicted Functional Partners:
katA
Catalase; Function of strongly homologous gene; enzyme.
  
 0.921
katB
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
 0.921
aceB
Malate synthase A; Function of strongly homologous gene; enzyme.
  
 
 0.917
aceB-2
Malate synthase G; Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl- CoA) and glyoxylate to form malate and CoA; Belongs to the malate synthase family. GlcB subfamily.
  
 
 0.916
FRAAL5480
Putative glycolate oxidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
  
  
 
0.910
FRAAL2902
Hypothetical protein; No homology to any previously reported sequences.
    
 0.906
FRAAL6740
Putative hydrolase (partial); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
    
 0.906
aceA
Isocitrate lyase; Function of strongly homologous gene; enzyme.
     
 0.905
FRAAL6699
Hypothetical protein; No homology to any previously reported sequences.
    
 0.903
FRAAL3862
Thiosulfate sulfurtransferase (partial match); Function of strongly homologous gene; enzyme.
       0.793
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.