STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FRAAL4592Putative kinase; Displays ATPase and GTPase activities. (289 aa)    
Predicted Functional Partners:
whiA
Putative WhiA type transcriptional regulator (Sporulation regulatory protein); Involved in cell division and chromosome segregation.
  
 0.955
FRAAL4591
Conserved hypothetical protein; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
  
  
 0.946
uvrC
DNA excision repair enzyme UvrABC; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.831
FRAAL1923
Ribonuclease E homolog; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; enzyme.
 
 
 
 0.743
glmM
Phosphoglucosamine mutase; Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; Belongs to the phosphohexose mutase family.
 
   
 0.736
FRAAL1260
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.723
FRAAL5224
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
   
 0.600
FRAAL4589
Hypothetical protein; No homology to any previously reported sequences.
       0.551
hpf
Conserved hypothetical protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
 
  
 0.499
gapA
Glyceraldehyde-3-phosphate dehydrogenase A; Function of strongly homologous gene; enzyme; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
     
 0.490
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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