STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potGPolyamine ABC-transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (465 aa)    
Predicted Functional Partners:
potH
Putrescine transport protein (ABC superfamily, membrane); Function of strongly homologous gene; transporter.
 0.995
potD
ABC-transporter polyamine-binding lipoprotein; Function of strongly homologous gene; transporter.
 
 0.994
potI
Polyamine ABC-transporter integral membrane protein; Function of strongly homologous gene; transporter.
 
 0.993
modB
Molybdenum ABC transporter membrane subunit; Function of strongly homologous gene; transporter.
  
 0.866
FRAAL5987
Putative amino acid transport protein (ABC superfamily, membrane); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
 
 0.529
FRAAL1998
Putative Competence protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
 0.527
ugpC
Sn-glycerol 3-phosphate transport protein (ABC superfamily, atp_bind); Function of strongly homologous gene; transporter; Belongs to the ABC transporter superfamily.
 
 
0.496
FRAAL6467
ABC transporter permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; transporter.
 
 
    0.477
FRAAL6023
Hypothetical protein; No homology to any previously reported sequences.
 
  
 0.469
gltK
Glutamate permease; Function of strongly homologous gene; enzyme.
 
 
 0.447
Your Current Organism:
Frankia alni
NCBI taxonomy Id: 326424
Other names: F. alni ACN14a, Frankia alni ACN14a, Frankia alni str. ACN14a, Frankia alni strain ACN14a, Frankia sp. ACN14a
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