STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PSHAb0159Putative sialidase; Function of strongly homologous gene; enzyme. (380 aa)    
Predicted Functional Partners:
PSHAb0160
Homologs of previously reported genes of unknown function; membrane component.
 
     0.854
nanA
N-acetylneuraminate lyase (aldolase); Function of strongly homologous gene; enzyme.
 
   
 0.852
yejH
Putative ATP-dependent helicase with nucleoside triP hydrolase domain; Function of strongly homologous gene; enzyme.
   
    0.727
PSHAb0151
Putative sodium-dependent carbohydrate permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homolgy.
 
     0.608
PSHAa2260
Conserved protein of unknown function with carboxypeptidase C domain; Homologs of previously reported genes of unknown function; enzyme.
   
 0.505
accC
Biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC); This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
    0.489
nagK
N-acylmannosamine kinase; Function of strongly homologous gene; enzyme.
 
   
 0.485
nagA
Putative N-acetylglucosamine-6-phosphate deacetylase; Function of strongly homologous gene; enzyme; Belongs to the metallo-dependent hydrolases superfamily. NagA family.
 
   
 0.471
PSHAb0005
Dipeptidyl-peptidase IV; Function of strongly homologous gene; enzyme.
  
   
 0.419
Your Current Organism:
Pseudoalteromonas haloplanktis
NCBI taxonomy Id: 326442
Other names: P. haloplanktis TAC125, Pseudoalteromonas haloplanktis TAC125, Pseudoalteromonas haloplanktis str. TAC125, Pseudoalteromonas haloplanktis strain TAC125
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