Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
EGM68574.1 | EGM68609.1 | SOHN41_03464 | SOHN41_03281 | Hypothetical protein. | Acyl dehydratase. | 0.446 |
EGM68574.1 | EGM69533.1 | SOHN41_03464 | SOHN41_02376 | Hypothetical protein. | acyl-CoA thioesterase II. | 0.486 |
EGM68574.1 | fbp | SOHN41_03464 | SOHN41_00270 | Hypothetical protein. | Fructose-1,6-bisphosphatase, type 1; Belongs to the FBPase class 1 family. | 0.458 |
EGM68609.1 | EGM68574.1 | SOHN41_03281 | SOHN41_03464 | Acyl dehydratase. | Hypothetical protein. | 0.446 |
EGM68609.1 | EGM69533.1 | SOHN41_03281 | SOHN41_02376 | Acyl dehydratase. | acyl-CoA thioesterase II. | 0.633 |
EGM68609.1 | EGM69534.1 | SOHN41_03281 | SOHN41_02377 | Acyl dehydratase. | Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.438 |
EGM68609.1 | EGM70438.1 | SOHN41_03281 | SOHN41_01646 | Acyl dehydratase. | acyl-CoA dehydrogenase. | 0.622 |
EGM68609.1 | fadB | SOHN41_03281 | SOHN41_04107 | Acyl dehydratase. | enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.917 |
EGM68609.1 | fadJ | SOHN41_03281 | SOHN41_02592 | Acyl dehydratase. | enoyl-CoA hydratase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.908 |
EGM68609.1 | plsB | SOHN41_03281 | SOHN41_03909 | Acyl dehydratase. | Glycerol-3-phosphate acyltransferase; Overlaps another CDS with the same product name; Belongs to the GPAT/DAPAT family. | 0.473 |
EGM69532.1 | EGM69533.1 | SOHN41_02375 | SOHN41_02376 | Hypothetical protein. | acyl-CoA thioesterase II. | 0.787 |
EGM69532.1 | EGM69534.1 | SOHN41_02375 | SOHN41_02377 | Hypothetical protein. | Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.500 |
EGM69533.1 | EGM68574.1 | SOHN41_02376 | SOHN41_03464 | acyl-CoA thioesterase II. | Hypothetical protein. | 0.486 |
EGM69533.1 | EGM68609.1 | SOHN41_02376 | SOHN41_03281 | acyl-CoA thioesterase II. | Acyl dehydratase. | 0.633 |
EGM69533.1 | EGM69532.1 | SOHN41_02376 | SOHN41_02375 | acyl-CoA thioesterase II. | Hypothetical protein. | 0.787 |
EGM69533.1 | EGM69534.1 | SOHN41_02376 | SOHN41_02377 | acyl-CoA thioesterase II. | Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.508 |
EGM69533.1 | EGM70242.1 | SOHN41_02376 | SOHN41_01836 | acyl-CoA thioesterase II. | 2,4-dienoyl-CoA reductase [NADPH]. | 0.435 |
EGM69533.1 | EGM70438.1 | SOHN41_02376 | SOHN41_01646 | acyl-CoA thioesterase II. | acyl-CoA dehydrogenase. | 0.439 |
EGM69533.1 | fadB | SOHN41_02376 | SOHN41_04107 | acyl-CoA thioesterase II. | enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.928 |
EGM69533.1 | fadJ | SOHN41_02376 | SOHN41_02592 | acyl-CoA thioesterase II. | enoyl-CoA hydratase; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. | 0.831 |
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