A0A1Y2ASZ2 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2ASZ2

DUF947-domain-containing protein. (215 aa)

Predicted Functional Partners:

A0A1Y2B2C8

0.972

A0A1Y2BRQ1

0.971

A0A1Y2D0G4

0.967

A0A1Y2CDF8

0.965

A0A1Y2CM50

0.959

A0A1Y2D1H1

0.955

A0A1Y2CRG9

0.947

A0A1Y2B327

0.944

A0A1Y2BQU5

0.944

A0A1Y2CXE6

0.916

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2ASZ2	A0A1Y2B2C8	DUF947-domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.972
A0A1Y2ASZ2	A0A1Y2B327	DUF947-domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.944
A0A1Y2ASZ2	A0A1Y2BQU5	DUF947-domain-containing protein.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.944
A0A1Y2ASZ2	A0A1Y2BRQ1	DUF947-domain-containing protein.	Sas10 domain-containing protein.	0.971
A0A1Y2ASZ2	A0A1Y2CDF8	DUF947-domain-containing protein.	Uncharacterized protein.	0.965
A0A1Y2ASZ2	A0A1Y2CM50	DUF947-domain-containing protein.	Uncharacterized protein.	0.959
A0A1Y2ASZ2	A0A1Y2CRG9	DUF947-domain-containing protein.	RNA helicase.	0.947
A0A1Y2ASZ2	A0A1Y2CXE6	DUF947-domain-containing protein.	Bystin-domain-containing protein.	0.916
A0A1Y2ASZ2	A0A1Y2D0G4	DUF947-domain-containing protein.	WD40 repeat-like protein.	0.967
A0A1Y2ASZ2	A0A1Y2D1H1	DUF947-domain-containing protein.	WD40 repeat-like protein.	0.955
A0A1Y2B2C8	A0A1Y2ASZ2	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	DUF947-domain-containing protein.	0.972
A0A1Y2B2C8	A0A1Y2B327	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.802
A0A1Y2B2C8	A0A1Y2BQU5	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.802
A0A1Y2B2C8	A0A1Y2BRQ1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Sas10 domain-containing protein.	0.999
A0A1Y2B2C8	A0A1Y2CDF8	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.983
A0A1Y2B2C8	A0A1Y2CM50	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Uncharacterized protein.	0.998
A0A1Y2B2C8	A0A1Y2CRG9	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	RNA helicase.	0.905
A0A1Y2B2C8	A0A1Y2CXE6	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	Bystin-domain-containing protein.	0.999
A0A1Y2B2C8	A0A1Y2D0G4	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD40 repeat-like protein.	0.997
A0A1Y2B2C8	A0A1Y2D1H1	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	WD40 repeat-like protein.	0.999