STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2C174Cyclin-like protein; Belongs to the cyclin family. (258 aa)    
Predicted Functional Partners:
A0A1Y2BUH4
Pkinase-domain-containing protein.
    
 0.930
A0A1Y2C6N8
Pkinase-domain-containing protein.
    
 0.930
A0A1Y2D2K0
Transcription elongation factor SPT5; The SPT4-SPT5 complex mediates both activation and inhibition of transcription elongation, and plays a role in pre-mRNA processing. This complex seems to be important for the stability of the RNA polymerase II elongation machinery on the chromatin template but not for the inherent ability of this machinery to translocate down the gene.
    
 0.827
A0A1Y2CZG3
NOT2_3_5 domain-containing protein.
   
   0.809
A0A1Y2CWB5
Spt4-domain-containing protein.
    
 0.793
A0A1Y2BPN5
Uncharacterized protein.
   
 0.774
A0A1Y2C3T0
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.774
A0A1Y2CG10
L domain-like protein.
   
 0.774
A0A1Y2CX57
Uncharacterized protein.
   
 0.774
A0A1Y2CVW4
Cyclin-like protein; Belongs to the cyclin family.
     
 0.771
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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