A0A1Y2CMG0 protein (Rhizoclosmatium globosum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1Y2CMG0

RNB-domain-containing protein. (964 aa)

Predicted Functional Partners:

A0A1Y2CUX8

0.973

A0A1Y2D3K2

0.972

A0A1Y2C2R2

0.968

A0A1Y2CMR5

0.968

A0A1Y2CMS4

0.967

A0A1Y2D156

0.966

A0A1Y2BP41

0.965

A0A1Y2C9S5

0.962

A0A1Y2D2Z3

0.962

A0A1Y2CQB7

0.961

Your Current Organism:

Rhizoclosmatium globosum

NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1Y2BP41	A0A1Y2C2R2	Antiviral helicase.	Uncharacterized protein.	0.990
A0A1Y2BP41	A0A1Y2C9S5	Antiviral helicase.	Ribosomal protein S5 domain 2-like protein.	0.990
A0A1Y2BP41	A0A1Y2CMG0	Antiviral helicase.	RNB-domain-containing protein.	0.965
A0A1Y2BP41	A0A1Y2CMR5	Antiviral helicase.	Uncharacterized protein.	0.993
A0A1Y2BP41	A0A1Y2CMS4	Antiviral helicase.	Ribosomal protein S5 domain 2-like protein.	0.998
A0A1Y2BP41	A0A1Y2CQB7	Antiviral helicase.	Uncharacterized protein.	0.994
A0A1Y2BP41	A0A1Y2CUX8	Antiviral helicase.	S1 motif domain-containing protein.	0.988
A0A1Y2BP41	A0A1Y2D156	Antiviral helicase.	ECR1_N domain-containing protein.	0.996
A0A1Y2BP41	A0A1Y2D2Z3	Antiviral helicase.	Tr-type G domain-containing protein.	0.811
A0A1Y2BP41	A0A1Y2D3K2	Antiviral helicase.	Uncharacterized protein.	0.998
A0A1Y2C2R2	A0A1Y2BP41	Uncharacterized protein.	Antiviral helicase.	0.990
A0A1Y2C2R2	A0A1Y2C9S5	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A1Y2C2R2	A0A1Y2CMG0	Uncharacterized protein.	RNB-domain-containing protein.	0.968
A0A1Y2C2R2	A0A1Y2CMR5	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1Y2C2R2	A0A1Y2CMS4	Uncharacterized protein.	Ribosomal protein S5 domain 2-like protein.	0.999
A0A1Y2C2R2	A0A1Y2CQB7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0A1Y2C2R2	A0A1Y2CUX8	Uncharacterized protein.	S1 motif domain-containing protein.	0.999
A0A1Y2C2R2	A0A1Y2D156	Uncharacterized protein.	ECR1_N domain-containing protein.	0.999
A0A1Y2C2R2	A0A1Y2D2Z3	Uncharacterized protein.	Tr-type G domain-containing protein.	0.998
A0A1Y2C2R2	A0A1Y2D3K2	Uncharacterized protein.	Uncharacterized protein.	0.999