STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A1Y2CU66Uncharacterized protein. (108 aa)    
Predicted Functional Partners:
A0A1Y2ASB6
PHD finger-like domain-containing protein 5A.
   
   0.843
A0A1Y2CBL1
Splicing factor 3B subunit 1.
    
   0.837
A0A1Y2CUE3
Pre-mRNA-processing-splicing factor 8-like protein.
    
   0.837
A0A1Y2CXE7
CPSF_A domain-containing protein.
    
   0.837
A0A1Y2CXU0
Uncharacterized protein.
    
   0.837
A0A1Y2D2M6
DUF382-domain-containing protein.
    
   0.837
A0A1Y2C3Z7
Cwf15/Cwc15 cell cycle control protein.
   
   0.598
A0A1Y2BFV3
Small nuclear ribonucleoprotein Sm D2.
   
   0.586
A0A1Y2BYV0
Sm domain-containing protein.
   
   0.577
A0A1Y2CYG4
Small nuclear ribonucleoprotein Sm D1; Involved in pre-mRNA splicing. Binds snRNA U1, U2, U4 and U5 which contain a highly conserved structural motif called the Sm binding site; Belongs to the snRNP core protein family.
   
   0.567
Your Current Organism:
Rhizoclosmatium globosum
NCBI taxonomy Id: 329046
Other names: R. globosum, Rhizoclosmatium sp. JEL06
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