Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AM1_0193 | AM1_0714 | Diguanylate cyclase (GGDEF). | EAL and cyclic nucleotide-binding domain protein. | 0.979 |
AM1_0547 | AM1_0714 | Diguanylate cyclase (GGDEF domain). | EAL and cyclic nucleotide-binding domain protein. | 0.884 |
AM1_0714 | AM1_0193 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase (GGDEF). | 0.979 |
AM1_0714 | AM1_0547 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase (GGDEF domain). | 0.884 |
AM1_0714 | AM1_3046 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase. | 0.838 |
AM1_0714 | AM1_3568 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase (GGDEF domain), putative. | 0.955 |
AM1_0714 | AM1_3569 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase (GGDEF domain), putative. | 0.795 |
AM1_0714 | AM1_4772 | EAL and cyclic nucleotide-binding domain protein. | GGDEF domain protein. | 0.802 |
AM1_0714 | AM1_5858 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase (GGDEF) domain protein. | 0.817 |
AM1_0714 | AM1_5960 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase. | 0.945 |
AM1_0714 | AM1_6053 | EAL and cyclic nucleotide-binding domain protein. | GGDEF family protein. | 0.857 |
AM1_0714 | AM1_6199 | EAL and cyclic nucleotide-binding domain protein. | Diguanylate cyclase (GGDEF domain), putative. | 0.947 |
AM1_3046 | AM1_0714 | Diguanylate cyclase. | EAL and cyclic nucleotide-binding domain protein. | 0.838 |
AM1_3568 | AM1_0714 | Diguanylate cyclase (GGDEF domain), putative. | EAL and cyclic nucleotide-binding domain protein. | 0.955 |
AM1_3568 | AM1_3569 | Diguanylate cyclase (GGDEF domain), putative. | Diguanylate cyclase (GGDEF domain), putative. | 0.772 |
AM1_3568 | AM1_5858 | Diguanylate cyclase (GGDEF domain), putative. | Diguanylate cyclase (GGDEF) domain protein. | 0.472 |
AM1_3569 | AM1_0714 | Diguanylate cyclase (GGDEF domain), putative. | EAL and cyclic nucleotide-binding domain protein. | 0.795 |
AM1_3569 | AM1_3568 | Diguanylate cyclase (GGDEF domain), putative. | Diguanylate cyclase (GGDEF domain), putative. | 0.772 |
AM1_3569 | AM1_5858 | Diguanylate cyclase (GGDEF domain), putative. | Diguanylate cyclase (GGDEF) domain protein. | 0.441 |
AM1_4772 | AM1_0714 | GGDEF domain protein. | EAL and cyclic nucleotide-binding domain protein. | 0.802 |
page 1 of 2