Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AM1_1617 | AM1_1618 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 0.614 |
AM1_1617 | AM1_1619 | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | Conserved hypothetical protein. | 0.406 |
AM1_1618 | AM1_1617 | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.614 |
AM1_1618 | AM1_1619 | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | Conserved hypothetical protein. | 0.643 |
AM1_1618 | AM1_2148 | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 3-hydroxyacyl-CoA dehydrogenase, C- domain family. | 0.476 |
AM1_1618 | AM1_6209 | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | Oxidoreductase, short chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.405 |
AM1_1619 | AM1_1617 | Conserved hypothetical protein. | Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family. | 0.406 |
AM1_1619 | AM1_1618 | Conserved hypothetical protein. | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 0.643 |
AM1_2148 | AM1_1618 | 3-hydroxyacyl-CoA dehydrogenase, C- domain family. | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 0.476 |
AM1_6209 | AM1_1618 | Oxidoreductase, short chain dehydrogenase/reductase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Oxidoreductase, zinc-binding dehydrogenase family; Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily. | 0.405 |