Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
AM1_0068 | AM1_0582 | Two-component hybrid histidine kinase sensor and regulator. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.938 |
AM1_0068 | AM1_1500 | Two-component hybrid histidine kinase sensor and regulator. | Two-component sensor histidine kinase, putative. | 0.998 |
AM1_0068 | AM1_1725 | Two-component hybrid histidine kinase sensor and regulator. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.882 |
AM1_0068 | AM1_1870 | Two-component hybrid histidine kinase sensor and regulator. | Two-component hybrid sensor and regulator histidine kinase. | 0.999 |
AM1_0068 | AM1_1963 | Two-component hybrid histidine kinase sensor and regulator. | Two-component signal transduction sensor histidine kinase. | 0.999 |
AM1_0068 | AM1_3330 | Two-component hybrid histidine kinase sensor and regulator. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.904 |
AM1_0068 | AM1_5108 | Two-component hybrid histidine kinase sensor and regulator. | PAS/PAC sensor signal transduction histidine kinase. | 0.999 |
AM1_0068 | AM1_5688 | Two-component hybrid histidine kinase sensor and regulator. | Two-component hybrid sensor and regulator histidine kinase, putative. | 0.999 |
AM1_0068 | AM1_5892 | Two-component hybrid histidine kinase sensor and regulator. | Chemotaxis response regulator, putative. | 0.987 |
AM1_0068 | AM1_5974 | Two-component hybrid histidine kinase sensor and regulator. | Two-component hybrid sensor and regulator histidine kinase; Has an ammonium transporter domain. | 0.999 |
AM1_0582 | AM1_0068 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Two-component hybrid histidine kinase sensor and regulator. | 0.938 |
AM1_0582 | AM1_1500 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Two-component sensor histidine kinase, putative. | 0.871 |
AM1_0582 | AM1_1725 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.841 |
AM1_0582 | AM1_1870 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Two-component hybrid sensor and regulator histidine kinase. | 0.971 |
AM1_0582 | AM1_1963 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Two-component signal transduction sensor histidine kinase. | 0.978 |
AM1_0582 | AM1_3330 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | 0.901 |
AM1_0582 | AM1_5108 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | PAS/PAC sensor signal transduction histidine kinase. | 0.641 |
AM1_0582 | AM1_5688 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Two-component hybrid sensor and regulator histidine kinase, putative. | 0.939 |
AM1_0582 | AM1_5892 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Chemotaxis response regulator, putative. | 0.762 |
AM1_0582 | AM1_5974 | Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor. | Two-component hybrid sensor and regulator histidine kinase; Has an ammonium transporter domain. | 0.992 |
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