STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AM1_5088Diguanylate cyclase/phosphodiesterase with EAL and GAF domains. (755 aa)    
Predicted Functional Partners:
AM1_0582
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
 
 
0.749
AM1_3454
Signal transduction protein containing an EAL domain, a PAS domain, a CBS domain pair and a GGDEF domain.
 
 
0.744
AM1_3330
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor.
 
 
0.716
AM1_1416
PAS sensor diguanylate cyclase/phophodiesterase, putative.
 
 
0.712
AM1_6306
Response regulator.
    
 0.682
AM1_5688
Two-component hybrid sensor and regulator histidine kinase, putative.
 
 
 0.566
AM1_1963
Two-component signal transduction sensor histidine kinase.
 
 
 0.557
AM1_3711
Diguanylate cyclase (GGDEF) domain protein.
 
 0.549
AM1_4980
Diguanylate cyclase/phosphodiesterase, putative.
 
  
0.548
AM1_5623
PAS sensor diguanylate cyclase, putative.
 
  
0.547
Your Current Organism:
Acaryochloris marina
NCBI taxonomy Id: 329726
Other names: A. marina MBIC11017, Acaryochloris marina MBIC11017
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