Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AM1_0482 | ureD | AM1_0482 | AM1_5103 | Cyanoglobin. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.609 |
AM1_5105 | ureA | AM1_5105 | AM1_5104 | Hypothetical protein. | Urease, gamma subunit; Belongs to the urease gamma subunit family. | 0.671 |
AM1_5105 | ureB | AM1_5105 | AM1_5106 | Hypothetical protein. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.559 |
AM1_5105 | ureD | AM1_5105 | AM1_5103 | Hypothetical protein. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.644 |
hypA | hypB | AM1_2834 | AM1_2835 | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Hydrogenase accessory protein HypB. | 0.992 |
hypA | ureD | AM1_2834 | AM1_5103 | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.719 |
hypA | ureE | AM1_2834 | AM1_0875 | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Probable urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.754 |
hypA | ureF | AM1_2834 | AM1_0868 | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.754 |
hypA | ureG | AM1_2834 | AM1_0867 | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.859 |
hypB | hypA | AM1_2835 | AM1_2834 | Hydrogenase accessory protein HypB. | Hydrogenase nickel insertion protein HypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase. | 0.992 |
hypB | ureA | AM1_2835 | AM1_5104 | Hydrogenase accessory protein HypB. | Urease, gamma subunit; Belongs to the urease gamma subunit family. | 0.738 |
hypB | ureB | AM1_2835 | AM1_5106 | Hydrogenase accessory protein HypB. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.619 |
hypB | ureC | AM1_2835 | AM1_5109 | Hydrogenase accessory protein HypB. | Urease, alpha subunit. | 0.740 |
hypB | ureD | AM1_2835 | AM1_5103 | Hydrogenase accessory protein HypB. | Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.912 |
hypB | ureE | AM1_2835 | AM1_0875 | Hydrogenase accessory protein HypB. | Probable urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family. | 0.944 |
hypB | ureF | AM1_2835 | AM1_0868 | Hydrogenase accessory protein HypB. | Urease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. | 0.976 |
hypB | ureG | AM1_2835 | AM1_0867 | Hydrogenase accessory protein HypB. | Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG. | 0.460 |
ureA | AM1_5105 | AM1_5104 | AM1_5105 | Urease, gamma subunit; Belongs to the urease gamma subunit family. | Hypothetical protein. | 0.671 |
ureA | hypB | AM1_5104 | AM1_2835 | Urease, gamma subunit; Belongs to the urease gamma subunit family. | Hydrogenase accessory protein HypB. | 0.738 |
ureA | ureB | AM1_5104 | AM1_5106 | Urease, gamma subunit; Belongs to the urease gamma subunit family. | Urease, beta subunit; Belongs to the urease beta subunit family. | 0.999 |
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