B0A54_07970 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_07970

Cyclin N-terminal domain-containing protein. (387 aa)

Predicted Functional Partners:

B0A54_00498

0.978

B0A54_11537

0.978

B0A54_15361

0.902

B0A54_15457

0.887

B0A54_15613

0.887

B0A54_11979

0.863

B0A54_10240

0.863

B0A54_13673

0.780

B0A54_09405

0.780

B0A54_12724

0.704

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_00498	B0A54_07970	A0A4U0VH95	A0A4U0UWY5	Uncharacterized protein.	Cyclin N-terminal domain-containing protein.	0.978
B0A54_00498	B0A54_10240	A0A4U0VH95	A0A4V5N7J4	Uncharacterized protein.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.997
B0A54_00498	B0A54_11537	A0A4U0VH95	A0A4V5N6X6	Uncharacterized protein.	Uncharacterized protein.	0.992
B0A54_00498	B0A54_11979	A0A4U0VH95	A0A4U0UMQ7	Uncharacterized protein.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.997
B0A54_00498	B0A54_15361	A0A4U0VH95	A0A4U0U584	Uncharacterized protein.	Negative regulator of the PHO system; Belongs to the protein kinase superfamily.	0.997
B0A54_00498	B0A54_15457	A0A4U0VH95	A0A4U0UB55	Uncharacterized protein.	Uncharacterized protein.	0.961
B0A54_00498	B0A54_15613	A0A4U0VH95	A0A4U0UBL5	Uncharacterized protein.	Uncharacterized protein.	0.961
B0A54_07970	B0A54_00498	A0A4U0UWY5	A0A4U0VH95	Cyclin N-terminal domain-containing protein.	Uncharacterized protein.	0.978
B0A54_07970	B0A54_09405	A0A4U0UWY5	A0A4U0UYT1	Cyclin N-terminal domain-containing protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.780
B0A54_07970	B0A54_10240	A0A4U0UWY5	A0A4V5N7J4	Cyclin N-terminal domain-containing protein.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.863
B0A54_07970	B0A54_11537	A0A4U0UWY5	A0A4V5N6X6	Cyclin N-terminal domain-containing protein.	Uncharacterized protein.	0.978
B0A54_07970	B0A54_11979	A0A4U0UWY5	A0A4U0UMQ7	Cyclin N-terminal domain-containing protein.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.863
B0A54_07970	B0A54_12724	A0A4U0UWY5	A0A4U0UNK4	Cyclin N-terminal domain-containing protein.	DNA ligase.	0.704
B0A54_07970	B0A54_13673	A0A4U0UWY5	A0A4U0UH83	Cyclin N-terminal domain-containing protein.	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	0.780
B0A54_07970	B0A54_15361	A0A4U0UWY5	A0A4U0U584	Cyclin N-terminal domain-containing protein.	Negative regulator of the PHO system; Belongs to the protein kinase superfamily.	0.902
B0A54_07970	B0A54_15457	A0A4U0UWY5	A0A4U0UB55	Cyclin N-terminal domain-containing protein.	Uncharacterized protein.	0.887
B0A54_07970	B0A54_15613	A0A4U0UWY5	A0A4U0UBL5	Cyclin N-terminal domain-containing protein.	Uncharacterized protein.	0.887
B0A54_09405	B0A54_07970	A0A4U0UYT1	A0A4U0UWY5	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	Cyclin N-terminal domain-containing protein.	0.780
B0A54_09405	B0A54_10240	A0A4U0UYT1	A0A4V5N7J4	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.401
B0A54_09405	B0A54_11979	A0A4U0UYT1	A0A4U0UMQ7	ATP-dependent DNA helicase II subunit 2; Single-stranded DNA-dependent ATP-dependent helicase.	Cyclin-dependent kinase 1; Belongs to the protein kinase superfamily.	0.401