STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sdhBSuccinate dehydrogenase subunit B; Similar to gi:15920714. (317 aa)    
Predicted Functional Partners:
sdhA
Succinate dehydrogenase subunit A.
 
 0.999
Saci_1266
succinyl-CoA ligase, alfa chain; Matches PF02629:CoA binding domain and PF00549: CoA-ligase: family includes the CoA ligases succinyl-Co A synthetase alpha and beta chains, malateCoA ligase and ATP-citrate lyase Some members of the family utilise ATP others use GTP.
 
 0.997
sucC
succinyl-CoA synthetase beta chain.
 
 0.996
Saci_2342
NADH-quinone oxidoreductase.
  
 
 0.995
sdhC
Succinate dehydrogenase subunit C.
 
 
 0.992
fumC
Fumarate hydratase class II.
 
 0.989
Saci_2344
NADH-ubiquinone oxidoreductase.
  
 
 0.989
sdhD
Succinate dehydrogenase subunit D.
    
  0.984
cisY
Citrate synthase.
  
 
 0.967
icd
Isocitrate dehydrogenase.
  
 
 0.967
Your Current Organism:
Sulfolobus acidocaldarius DSM 639
NCBI taxonomy Id: 330779
Other names: S. acidocaldarius DSM 639, Sulfolobus acidocaldarius ATCC 33909, Sulfolobus acidocaldarius NCIB 11770
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.