DUI87_13562 protein (Hirundo rustica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DUI87_13562

Uncharacterized protein. (883 aa)

Predicted Functional Partners:

DUI87_24686

0.865

DUI87_24688

0.865

DUI87_31805

0.555

DUI87_23223

0.475

DUI87_08783

0.472

DUI87_32325

0.454

DUI87_15849

0.454

DUI87_32270

0.445

DUI87_14219

0.431

DUI87_12466

0.407

Your Current Organism:

Hirundo rustica

NCBI taxonomy Id: 333673
Other names: H. rustica rustica, Hirundo rustica rustica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DUI87_08783	DUI87_13562	A0A3M0KKW1	A0A3M0K9J7	CRC domain-containing protein.	Uncharacterized protein.	0.472
DUI87_08783	DUI87_15849	A0A3M0KKW1	A0A3M0JZU1	CRC domain-containing protein.	Uncharacterized protein.	0.986
DUI87_08783	DUI87_23223	A0A3M0KKW1	A0A3M0JHY1	CRC domain-containing protein.	Uncharacterized protein.	0.999
DUI87_08783	DUI87_32325	A0A3M0KKW1	A0A3M0IXH9	CRC domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.995
DUI87_12466	DUI87_13562	A0A3M0KHM1	A0A3M0K9J7	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.407
DUI87_12466	DUI87_15849	A0A3M0KHM1	A0A3M0JZU1	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Uncharacterized protein.	0.444
DUI87_12466	DUI87_24686	A0A3M0KHM1	A0A3M0JC03	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Helicase ATP-binding domain-containing protein.	0.999
DUI87_12466	DUI87_24688	A0A3M0KHM1	A0A3M0JCD5	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	Helicase C-terminal domain-containing protein.	0.999
DUI87_12466	DUI87_32270	A0A3M0KHM1	A0A3M0IQQ4	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	RPA_C domain-containing protein.	0.999
DUI87_12466	DUI87_32325	A0A3M0KHM1	A0A3M0IXH9	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	WD_REPEATS_REGION domain-containing protein.	0.444
DUI87_13562	DUI87_08783	A0A3M0K9J7	A0A3M0KKW1	Uncharacterized protein.	CRC domain-containing protein.	0.472
DUI87_13562	DUI87_12466	A0A3M0K9J7	A0A3M0KHM1	Uncharacterized protein.	Replication protein A subunit; As part of the heterotrimeric replication protein A complex (RPA/RP-A), binds and stabilizes single-stranded DNA intermediates, that form during DNA replication or upon DNA stress. It prevents their reannealing and in parallel, recruits and activates different proteins and complexes involved in DNA metabolism. Thereby, it plays an essential role both in DNA replication and the cellular response to DNA damage.	0.407
DUI87_13562	DUI87_14219	A0A3M0K9J7	A0A3M0K9J2	Uncharacterized protein.	Uncharacterized protein.	0.431
DUI87_13562	DUI87_15849	A0A3M0K9J7	A0A3M0JZU1	Uncharacterized protein.	Uncharacterized protein.	0.454
DUI87_13562	DUI87_23223	A0A3M0K9J7	A0A3M0JHY1	Uncharacterized protein.	Uncharacterized protein.	0.475
DUI87_13562	DUI87_24686	A0A3M0K9J7	A0A3M0JC03	Uncharacterized protein.	Helicase ATP-binding domain-containing protein.	0.865
DUI87_13562	DUI87_24688	A0A3M0K9J7	A0A3M0JCD5	Uncharacterized protein.	Helicase C-terminal domain-containing protein.	0.865
DUI87_13562	DUI87_31805	A0A3M0K9J7	A0A3M0JAA2	Uncharacterized protein.	Uncharacterized protein.	0.555
DUI87_13562	DUI87_32270	A0A3M0K9J7	A0A3M0IQQ4	Uncharacterized protein.	RPA_C domain-containing protein.	0.445
DUI87_13562	DUI87_32325	A0A3M0K9J7	A0A3M0IXH9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.454