STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCH79_00020120Uncharacterized protein. (235 aa)    
Predicted Functional Partners:
ENSGAFP00000023893
Small nuclear ribonucleoprotein polypeptide C.
   
 0.988
CCH79_00018025
LRRcap domain-containing protein.
   
 0.987
CCH79_00008815
Small nuclear ribonucleoprotein Sm D1; Essential for pre-mRNA splicing. Implicated in the formation of stable, biologically active snRNP structures. Belongs to the snRNP core protein family.
   
 0.986
ENSGAFP00000009889
Small nuclear ribonucleoprotein polypeptide E.
   
 0.985
CCH79_00003631
Small nuclear ribonucleoprotein Sm D2.
   
 0.984
CCH79_00000772
Small nuclear ribonucleoprotein Sm D3.
   
 0.984
CCH79_00019938
Small nuclear ribonucleoprotein G.
   
 0.982
CCH79_00018942
RRM domain-containing protein.
   
 0.982
CCH79_00014921
Sm domain-containing protein.
   
 0.981
CCH79_00016385
Uncharacterized protein.
   
 0.980
Your Current Organism:
Gambusia affinis
NCBI taxonomy Id: 33528
Other names: G. affinis, western mosquitofish
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.