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Neut_0009 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0009" - Transcriptional regulator, XRE family protein in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0009Transcriptional regulator, XRE family protein; PFAM- helix-turn-helix domain protein; KEGG- eba-ebB68 hypothetical protein (100 aa)    
Predicted Functional Partners:
Neut_0008
PFAM- LysR, substrate-binding; KEGG- eba-c1A250 regulatory protein, LysR-family (219 aa)
 
          0.813
Neut_0007
KEGG- rme-Rmet_2400 transcriptional regulator, LysR family (124 aa)
   
          0.768
Neut_0126
KEGG- xfa-XF1787 hypothetical protein (249 aa)
   
          0.700
Neut_0112
KEGG- eba-ebA2454 hypothetical protein (271 aa)
   
          0.643
Neut_0072
KEGG- xcv-XCV2359 hypothetical protein (121 aa)
   
          0.607
Neut_0105
KEGG- eba-ebB75 hypothetical protein (103 aa)
   
          0.596
Neut_0011
Transcriptional regulator, LysR family; PFAM- regulatory protein, LysR; LysR, substrate-binding; KEGG- rme-Rmet_2400 transcriptional regulator, LysR family (302 aa)
   
          0.591
Neut_0123
KEGG- eba-ebA2468 hypothetical protein (86 aa)
   
          0.589
Neut_0074
KEGG- xcb-XC_2025 hypothetical protein (114 aa)
   
          0.571
Neut_0106
KEGG- eba-ebA2433 conserved hypothetical plasmid protein (369 aa)
 
          0.539
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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