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STRINGSTRING
Neut_0054 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0054" - PFAM: cytochrome c biogenesis protein, transmembrane region in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0054PFAM- cytochrome c biogenesis protein, transmembrane region; KEGG- jan-Jann_2398 cytochrome c biogenesis protein, transmembrane protein (248 aa)    
Predicted Functional Partners:
Neut_1245
PFAM- Redoxin domain protein; KEGG- neu-NE1319 thioredoxin (154 aa)
     
  0.960
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (419 aa)
 
   
  0.847
Neut_0845
PFAM- Redoxin domain protein; KEGG- neu-NE2390 thioredoxin (181 aa)
     
  0.757
Neut_0010
PFAM- Redoxin domain protein; KEGG- rme-Rmet_2395 thioredoxin-like protein (277 aa)
 
   
  0.712
hemE
Uroporphyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III (356 aa)
         
  0.534
Neut_0053
KEGG- ppu-PP5391 hypothetical protein (162 aa)
              0.514
Neut_0052
KEGG- bbr-BB1386 hypothetical protein (754 aa)
              0.430
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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