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Neut_0223 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0223" - KEGG: neu:NE0053 D-Ala-D-Ala carboxypeptidase 3 in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
Neut_0223KEGG- neu-NE0053 D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM- D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM- peptidase S13, D-Ala-D-Ala carboxypeptidase C (475 aa)    
Predicted Functional Partners:
Neut_1808
Penicillin-binding protein, 1A family protein; KEGG- neu-NE2317 penicillin-binding 1 (peptidoglycan synthetase) transmembrane protein; TIGRFAM- penicillin-binding protein, 1A family; PFAM- glycosyl transferase, family 51; penicillin-binding protein, transpeptidase (770 aa)
     
  0.932
mrdA
Peptidoglycan D,D-transpeptidase MrdA; Catalyzes cross-linking of the peptidoglycan cell wall; Belongs to the transpeptidase family. MrdA subfamily (625 aa)
   
 
  0.928
mtgA
Biosynthetic peptidoglycan transglycosylase; Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors; Belongs to the glycosyltransferase 51 family (244 aa)
   
 
  0.928
ftsI
Peptidoglycan D,D-transpeptidase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (579 aa)
       
  0.920
Neut_0761
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; PFAM- beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG- neu-NE1485 D-alanyl-D-alanine carboxypeptidase 1 (S11) family; Belongs to the peptidase S11 family (380 aa)
       
  0.907
Neut_0222
KEGG- neu-NE0052 hypothetical protein (106 aa)
              0.755
Neut_0220
Succinate--CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit (397 aa)
   
        0.647
Neut_0221
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (291 aa)
              0.642
Neut_0219
Histidine kinase; KEGG- neu-NE0049 sensory transduction histidine kinase; TIGRFAM- PAS sensor protein; PFAM- response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART- PAS domain containing protein (1221 aa)
   
        0.634
Neut_0218
PFAM- class II aldolase/adducin family protein; KEGG- neu-NE0048 hypothetical protein (260 aa)
              0.606
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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