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rpsU protein (Nitrosomonas eutropha) - STRING interaction network
"rpsU" - PFAM: ribosomal protein S21 in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsUPFAM- ribosomal protein S21; KEGG- neu-NE0226 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family (70 aa)    
Predicted Functional Partners:
rpmH
PFAM- ribosomal protein L34; KEGG- neu-NE0390 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (44 aa)
     
 
  0.993
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (87 aa)
   
 
  0.988
rpmB
PFAM- ribosomal protein L28; KEGG- neu-NE1465 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (78 aa)
   
 
  0.986
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA (89 aa)
     
 
  0.985
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
     
 
  0.983
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (144 aa)
     
 
  0.981
rpsP
PFAM- ribosomal protein S16; KEGG- neu-NE1671 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (85 aa)
   
 
  0.980
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (129 aa)
 
 
  0.979
rpmA
PFAM- ribosomal protein L27; KEGG- neu-NE1292 ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (85 aa)
     
 
  0.979
rpmG
PFAM- ribosomal protein L33; KEGG- neu-NE1466 ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family (51 aa)
     
 
  0.975
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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