• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Neut_0394 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0394" - TIGRFAM: DNA protecting protein DprA in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0394TIGRFAM- DNA protecting protein DprA; PFAM- SMF family protein; KEGG- neu-NE1968 SMF family (373 aa)    
Predicted Functional Partners:
Neut_0728
TIGRFAM- DNA internalization-related competence protein ComEC/Rec2; PFAM- beta-lactamase domain protein; ComEC/Rec2-related protein; KEGG- neu-NE2408 DNA internalization-related competence protein ComEC/Rec2 (799 aa)
 
   
  0.877
Neut_2139
KEGG- neu-NE2301 hypothetical protein (236 aa)
 
   
  0.853
Neut_2377
Mg chelatase, subunit ChlI; KEGG- neu-NE0193 probable Mg(2+) chelatase family protein; TIGRFAM- Mg chelatase, subunit ChlI; PFAM- magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART- AAA ATPase (499 aa)
 
  0.815
Neut_0393
PFAM- Peptidoglycan-binding LysM; KEGG- neu-NE1969 LysM motif (342 aa)
   
   
  0.778
smg
Protein Smg homolog; PFAM- protein of unknown function DUF494; KEGG- neu-NE1967 Smg protein; Belongs to the Smg family (152 aa)
   
        0.727
Neut_0782
UPF0758 protein Neut_0782; PFAM- DNA repair protein RadC; KEGG- neu-NE1464 DNA repair protein radC family; Belongs to the UPF0758 family (224 aa)
   
   
  0.699
Neut_0079
PFAM- DNA repair protein RadC; KEGG- eba-ebA2402 DNA repair protein similar to RadC-family (167 aa)
   
   
  0.698
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus (316 aa)
 
          0.639
recA
Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage (343 aa)
     
 
  0.609
Neut_0392
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (168 aa)
              0.576
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (7%) [HD]