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trmJ protein (Nitrosomonas eutropha) - STRING interaction network
"trmJ" - tRNA in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmJtRNA (cytidine/uridine-2’-O-)-methyltransferase TrmJ; Catalyzes the formation of 2’O-methylated cytidine (Cm32) or 2’O-methylated uridine (Um32) at position 32 in tRNA (248 aa)    
Predicted Functional Partners:
Neut_0407
Inositol-1-monophosphatase; PFAM- inositol monophosphatase; KEGG- neu-NE1954 inositol monophosphatase (extragenic suppressor protein) (275 aa)
 
        0.769
cysS
Cysteine--tRNA ligase; KEGG- neu-NE0043 cysteinyl-tRNA synthetase; TIGRFAM- cysteinyl-tRNA synthetase; PFAM- cysteinyl-tRNA synthetase, class Ia; Belongs to the class-I aminoacyl-tRNA synthetase family (467 aa)
 
        0.736
Neut_0406
PFAM- Mammalian cell entry related domain protein; KEGG- neu-NE1955 mce related protein (301 aa)
              0.564
Neut_0405
KEGG- neu-NE1956 putative lipoprotein (200 aa)
              0.564
ftsJ
Ribosomal RNA large subunit methyltransferase E; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2’-O position of the ribose in the fully assembled 50S ribosomal subunit (206 aa)
   
 
  0.551
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs; Belongs to the RNA methyltransferase TrmD family (281 aa)
           
  0.530
mutS
DNA mismatch repair protein MutS; This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity (880 aa)
 
        0.427
lnt
Apolipoprotein N-acyltransferase; Transfers the fatty acyl group on membrane lipoproteins (497 aa)
   
        0.409
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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