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STRINGSTRING
Neut_0420 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0420" - PFAM: response regulator receiver in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0420PFAM- response regulator receiver; KEGG- neu-NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL) (180 aa)    
Predicted Functional Partners:
Neut_0422
Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S); KEGG- neu-NE1700 diguanylate cyclase/phosphodiesterase domain 2 (EAL); TIGRFAM- PAS sensor protein; diguanylate cyclase; PFAM- GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; SMART- PAS domain containing protein; PAC repeat-containing protein (791 aa)
 
  0.840
Neut_1162
CheA signal transduction histidine kinases; PFAM- response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG- neu-NE1250 two-component hybrid sensor and regulator (1716 aa)
 
 
  0.756
Neut_0219
Histidine kinase; KEGG- neu-NE0049 sensory transduction histidine kinase; TIGRFAM- PAS sensor protein; PFAM- response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART- PAS domain containing protein (1221 aa)
 
 
  0.717
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (906 aa)
         
  0.676
Neut_2285
TIGRFAM- diguanylate cyclase; PFAM- GGDEF domain containing protein; EAL domain protein; response regulator receiver; KEGG- neu-NE0080 diguanylate cyclase/phosphodiesterase domain 2 (EAL) (574 aa)
 
 
  0.576
Neut_0525
TIGRFAM- diguanylate cyclase; PFAM- GGDEF domain containing protein; EAL domain protein; MHYT domain protein; KEGG- bxe-Bxe_B2102 putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) (706 aa)
 
 
  0.568
Neut_0139
PFAM- PDZ/DHR/GLGF domain protein; KEGG- neu-NE0018 PDZ domain (also known as DHR or GLGF) (448 aa)
   
        0.526
Neut_1271
KEGG- neu-NE1856 hypothetical protein (496 aa)
   
          0.525
Neut_1425
KEGG- nmu-Nmul_A1957 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s); TIGRFAM- PAS sensor protein; diguanylate cyclase; PFAM- GGDEF domain containing protein; EAL domain protein; SMART- PAS domain containing protein (984 aa)
 
 
  0.487
Neut_0718
KEGG- neu-NE1538 hypothetical protein (433 aa)
   
          0.451
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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