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rpmF protein (Nitrosomonas eutropha) - STRING interaction network
"rpmF" - TIGRFAM: ribosomal protein L32 in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Cooccurence
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[Homology]
Score
rpmFTIGRFAM- ribosomal protein L32; PFAM- ribosomal L32p protein; KEGG- neu-NE1644 probable 50S ribosomal subunit protein L32; Belongs to the bacterial ribosomal protein bL32 family (60 aa)    
Predicted Functional Partners:
rpsP
PFAM- ribosomal protein S16; KEGG- neu-NE1671 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (85 aa)
   
 
  0.996
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (129 aa)
   
 
  0.996
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (103 aa)
   
 
  0.995
rpmB
PFAM- ribosomal protein L28; KEGG- neu-NE1465 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (78 aa)
   
 
  0.995
rplL
50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation (121 aa)
   
 
  0.995
rpsO
30S ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA (89 aa)
   
 
  0.995
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA (144 aa)
   
 
  0.994
rplQ
PFAM- ribosomal protein L17; KEGG- neu-NE0427 ribosomal protein L17 (130 aa)
   
 
  0.994
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (92 aa)
     
 
  0.994
rplO
50S ribosomal protein L15; Binds to the 23S rRNA (153 aa)
   
 
  0.994
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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