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STRINGSTRING
Neut_0540 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0540" - PFAM: restriction modification system DNA specificity domain in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Neut_0540PFAM- restriction modification system DNA specificity domain; KEGG- neu-NE0384 restriction modification system, type I (422 aa)    
Predicted Functional Partners:
Neut_0541
PFAM- N-6 DNA methylase; KEGG- dge-Dgeo_2017 N-6 DNA methylase (542 aa)
 
  0.990
Neut_0537
Type I restriction enzyme R Protein; Subunit R is required for both nuclease and ATPase activities, but not for modification (1072 aa)
 
   
  0.986
Neut_0539
annotation not available (190 aa)
              0.847
Neut_0538
annotation not available (302 aa)
              0.847
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (906 aa)
     
 
  0.815
Neut_1942
KEGG- plu-plu4319 type I site-specific deoxyribonuclease HsdM (116 aa)
 
 
  0.806
Neut_2448
KEGG- xfa-XF2724 type I restriction-modification system (92 aa)
 
 
  0.772
Neut_2561
PFAM- helicase domain protein; type III restriction enzyme, res subunit; SMART- DEAD/DEAH box helicase domain protein; KEGG- pst-PSPTO0037 helicase domain protein (1513 aa)
   
 
  0.695
Neut_1335
DNA or RNA helicases of superfamily II-like protein; KEGG- mpe-MYPE5580 hypothetical protein (820 aa)
     
 
  0.571
Neut_1334
PFAM- Eco57I restriction endonuclease; KEGG- cte-CT1160 type III restriction system endonuclease, putative (482 aa)
   
 
  0.568
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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