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STRINGSTRING
Neut_0585 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0585" - PFAM: protein of unknown function UPF0125 in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0585PFAM- protein of unknown function UPF0125; KEGG- neu-NE0428 hypothetical protein; Belongs to the UPF0125 (RnfH) family (105 aa)    
Predicted Functional Partners:
Neut_0586
PFAM- cyclase/dehydrase; KEGG- neu-NE0429 hypothetical protein (147 aa)
 
   
  0.936
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a ’tag peptide’, a short internal open reading frame. During trans-translation Ala- aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...] (149 aa)
   
        0.720
ctaA
Heme A synthase; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily (356 aa)
              0.589
Neut_0645
Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane complex involved in electron transport (218 aa)
 
     
  0.587
Neut_0589
PFAM- RDD domain containing protein; KEGG- neu-NE0432 putative transmembrane protein (139 aa)
 
          0.507
Neut_2376
PFAM- protein of unknown function DUF526; KEGG- neu-NE0192 hypothetical protein (102 aa)
   
          0.477
Neut_2147
PFAM- protein of unknown function YGGT; KEGG- neu-NE0394 YGGT family (186 aa)
   
          0.463
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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