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STRINGSTRING
Neut_0637 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0637" - PFAM: fatty acid desaturase in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0637PFAM- fatty acid desaturase; KEGG- neu-NE2233 fatty acid desaturase, type 2 (327 aa)    
Predicted Functional Partners:
Neut_0906
KEGG- neu-NE1790 hypothetical protein (373 aa)
   
          0.674
Neut_0905
KEGG- neu-NE1791 hypothetical protein (315 aa)
   
          0.635
Neut_2085
PFAM- Peptidoglycan-binding domain 1 protein; KEGG- neu-NE2133 putative peptidoglycan binding domain 1 (194 aa)
   
          0.633
Neut_1035
PFAM- phage integrase family protein; lipopolysaccharide biosynthesis; KEGG- neu-NE0588 phage integrase-chain length determinant protein (660 aa)
   
          0.627
Neut_0178
KEGG- neu-NE0494 hypothetical protein (111 aa)
   
          0.621
Neut_2116
KEGG- neu-NE2270 hypothetical protein (326 aa)
   
          0.615
Neut_0638
KEGG- neu-NE2229 possible long-chain N-acyl amino acid synthase (299 aa)
 
          0.593
Neut_0717
PFAM- cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG- neu-NE1539 hypothetical protein (573 aa)
   
        0.588
Neut_2228
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (95 aa)
   
          0.583
Neut_2219
CRISPR-associated protein, Csm4 family; KEGG- neu-NE0120 hypothetical protein (322 aa)
   
          0.581
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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