• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Neut_0772 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0772" - PFAM: phosphoribulokinase/uridine kinase in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_0772PFAM- phosphoribulokinase/uridine kinase; KEGG- neu-NE1474 phosphoribulokinase (290 aa)    
Predicted Functional Partners:
cbbL
Ribulose bisphosphate carboxylase large chain; RuBisCO catalyzes two reactions- the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily (473 aa)
 
   
  0.989
Neut_0805
PFAM- ribulose bisphosphate carboxylase, small chain; KEGG- nha-Nham_4333 ribulose bisphosphate carboxylase, small chain (108 aa)
 
   
  0.977
Neut_2096
PFAM- ribulose-phosphate 3-epimerase; KEGG- neu-NE2148 ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family (226 aa)
       
  0.937
rpiA
Ribose-5-phosphate isomerase A; Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate (241 aa)
         
    0.900
Neut_0803
PFAM- regulatory protein, LysR; LysR, substrate-binding; KEGG- nha-Nham_4331 transcriptional regulatory protein, LysR family (306 aa)
 
     
  0.755
Neut_0773
PFAM- UvrD/REP helicase; KEGG- neu-NE1473 UvrD/REP helicase (748 aa)
              0.655
Neut_2321
PFAM- Haloacid dehalogenase domain protein hydrolase; KEGG- neu-NE0947 hydrolase family (187 aa)
 
          0.641
Neut_1111
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis (415 aa)
           
  0.558
Neut_0771
PFAM- peptidase M48, Ste24p; KEGG- neu-NE1475 hypothetical protein (263 aa)
              0.544
Neut_1112
PFAM- cytochrome c1; KEGG- neu-NE0811 cytochrome c1 (234 aa)
           
  0.540
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (10%) [HD]