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Neut_0882 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_0882" - Transcriptional regulator, TraR/DksA family protein in Nitrosomonas eutropha
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Textmining
[Homology]
Score
Neut_0882Transcriptional regulator, TraR/DksA family protein; KEGG- noc-Noc_2010 C4-type zinc finger protein, DksA/TraR family (135 aa)    
Predicted Functional Partners:
rpoZ
DNA-directed RNA polymerase subunit omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta’ subunit thereby facilitating its interaction with the beta and alpha subunits (67 aa)
   
 
  0.631
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1404 aa)
       
 
  0.623
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (335 aa)
       
 
  0.580
Neut_0881
PFAM- short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG- mst-Msp_0714 predicted short chain dehydrogenase (248 aa)
              0.556
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1359 aa)
       
 
  0.551
Neut_0880
PFAM- protein of unknown function UPF0027; KEGG- noc-Noc_2009 hypothetical protein (390 aa)
 
          0.494
rpoH
TIGRFAM- RNA polymerase sigma factor RpoH; PFAM- sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG- neu-NE0584 sigma-70 factor family (280 aa)
       
 
  0.481
rpoD
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth (749 aa)
       
 
  0.481
Neut_0884
KEGG- xoo-XOO3880 putative transposase (124 aa)
              0.465
Neut_0883
PFAM- transposase, IS4 family protein; KEGG- eba-p2A101 putative transposase, fragment (158 aa)
              0.465
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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