STRINGSTRING
Neut_1006 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1006" - Hypothetical protein in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1006Hypothetical protein (300 aa)    
Predicted Functional Partners:
Neut_1005
Hypothetical protein (300 aa)
            0.953
Neut_0778
DNA polymerase I (906 aa)
   
        0.536
Neut_0209
Beta-lactamase domain-containing protein (468 aa)
   
        0.483
Neut_1008
ABC-2 type transporter (382 aa)
              0.467
Neut_1007
ABC-2 type transporter (374 aa)
              0.467
Neut_1009
ABC transporter-like protein (594 aa)
              0.461
Neut_1010
Hypothetical protein (346 aa)
              0.459
Neut_2302
ABC transporter-like protein (240 aa)
   
        0.438
dapE
Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls (378 aa)
              0.428
Neut_2026
Outer membrane chaperone Skp (OmpH) (187 aa)
              0.428
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha, N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha Koops et al. 2001, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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