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Neut_1209 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1209" - DNA-binding protein Fis in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Neut_1209DNA-binding protein Fis; PFAM- helix-turn-helix, Fis-type; KEGG- neu-NE0875 probable factor-for-inversion-stimulation transcription regulator protein; Belongs to the transcriptional regulatory Fis family (80 aa)    
Predicted Functional Partners:
dusB
tRNA-dihydrouridine synthase B; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family (337 aa)
   
   
  0.973
purH
Bifunctional purine biosynthesis protein PurH; KEGG- neu-NE0876 probable phosphoribosylaminoimidazolecarboxamide formyltransferase and IMP cyclodydrolase transmembrane protein; TIGRFAM- phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM- AICARFT/IMPCHase bienzyme; MGS domain protein (520 aa)
   
        0.894
purD
Phosphoribosylamine--glycine ligase; KEGG- neu-NE0877 phosphoribosylglycinamide synthetase; TIGRFAM- phosphoribosylamine--glycine ligase; PFAM- phosphoribosylglycinamide synthetase; Belongs to the GARS family (432 aa)
   
        0.750
Neut_1207
TIGRFAM- Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM- monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG- neu-NE0873 aromatic-ring hydroxylase (flavoprotein monooxygenase) (391 aa)
              0.647
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (335 aa)
   
      0.554
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (144 aa)
     
        0.541
Neut_2514
TIGRFAM- small GTP-binding protein; GTP-binding protein TypA; PFAM- elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; KEGG- neu-NE2554 GTP-binding elongation factor-elongation factor Tu domain 2 (604 aa)
     
   
  0.517
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5’-leader sequence from pre-tRNA to produce the mature 5’-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5’-leader sequence and broadening the substrate specificity of the ribozyme (121 aa)
     
        0.495
rpmH
PFAM- ribosomal protein L34; KEGG- neu-NE0390 ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family (44 aa)
     
        0.479
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (906 aa)
     
      0.463
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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