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Neut_1395 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1395" - RNA polymerase, sigma-24 subunit, RpoE in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
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Experiments
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[Homology]
Score
Neut_1395RNA polymerase, sigma-24 subunit, RpoE; PFAM- sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; KEGG- neu-NE0917 RNA polymerase sigma-70 factor (167 aa)    
Predicted Functional Partners:
Neut_1396
KEGG- neu-NE0918 hypothetical protein (240 aa)
              0.888
Neut_0343
Flagellar rod assembly protein/muramidase FlgJ; KEGG- neu-NE0310 mannosyl-glycoprotein endo-beta-N-acetylglucosamidases; TIGRFAM- flagellar rod assembly protein/muramidase FlgJ; PFAM- Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART- Lysozyme subfamily 2 (335 aa)
       
      0.679
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (419 aa)
         
  0.657
Neut_1784
KEGG- neu-NE2330 sigma-E factor negative regulatory protein RseA (191 aa)
   
 
  0.650
Neut_1397
ABC transporter-related protein; PFAM- ABC transporter, transmembrane region; ABC transporter related; SMART- AAA ATPase; KEGG- neu-NE0919 ABC transporter, fused permease and ATPase domains (772 aa)
 
          0.645
Neut_1398
KEGG- neu-NE0920 hypothetical protein (155 aa)
 
          0.645
Neut_0219
Histidine kinase; KEGG- neu-NE0049 sensory transduction histidine kinase; TIGRFAM- PAS sensor protein; PFAM- response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART- PAS domain containing protein (1221 aa)
     
 
  0.584
Neut_2091
PFAM- FecR protein; KEGG- neu-NE2139 putative transmembrane sensor (320 aa)
   
 
  0.581
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1404 aa)
     
 
  0.497
flhD
Flagellar transcriptional regulator FlhD; Functions in complex with FlhC as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways; Belongs to the FlhD family (105 aa)
   
 
      0.492
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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