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Neut_1395 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1395" - RNA polymerase factor sigma-70 in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1395RNA polymerase factor sigma-70 (167 aa)    
Predicted Functional Partners:
Neut_1396
Hypothetical protein (240 aa)
              0.859
Neut_2091
Putative FecR protein (320 aa)
   
 
  0.774
Neut_1397
ABC transporter-like protein (772 aa)
         
  0.602
Neut_1398
Hypothetical protein (155 aa)
              0.601
Neut_0728
DNA internalization-related competence protein ComEC/Rec2 (799 aa)
 
   
  0.598
Neut_0259
NUDIX hydrolase (149 aa)
   
          0.588
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1404 aa)
       
 
  0.574
Neut_1394
Hypothetical protein (167 aa)
 
          0.571
Neut_1685
Peptidase S1 and S6, chymotrypsin/Hap (379 aa)
 
   
  0.518
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism (296 aa)
 
          0.500
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha, N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha Koops et al. 2001, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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