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Neut_1405 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1405" - PFAM: cytochrome c, class I in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1405PFAM- cytochrome c, class I; KEGG- neu-NE0926 cytochrome c, class I (232 aa)    
Predicted Functional Partners:
Neut_1404
PFAM- cytochrome c, class I; KEGG- neu-NE0925 cytochrome c, class IC-cytochrome c, class I (127 aa)
 
          0.967
Neut_1403
PFAM- multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG- neu-NE0924 multicopper oxidase type 1 (314 aa)
 
          0.909
Neut_1406
PFAM- multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; KEGG- neu-NE0927 multicopper oxidase type 1 (353 aa)
 
          0.893
Neut_0385
KEGG- neu-NE1977 putative transmembrane protein (63 aa)
   
          0.629
Neut_0723
KEGG- neu-NE1529 possible signal peptide protein (165 aa)
   
 
      0.533
Neut_2463
KEGG- neu-NE1274 cytochrome c, class I (310 aa)
 
 
 
  0.523
Neut_0178
KEGG- neu-NE0494 hypothetical protein (111 aa)
   
          0.520
Neut_2219
CRISPR-associated protein, Csm4 family; KEGG- neu-NE0120 hypothetical protein (322 aa)
   
          0.517
Neut_2225
TIGRFAM- CRISPR-associated protein, NE0113 family; KEGG- neu-NE0113 hypothetical protein (376 aa)
   
          0.513
Neut_2228
CRISPR-associated endoribonuclease Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette (95 aa)
   
          0.499
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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