Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
PFAM- Orn/DAP/Arg decarboxylase 2; KEGG- neu-NE1126 Orn/DAP/Arg decarboxylases family 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family (411 aa)
Predicted Functional Partners:
PFAM- AMP-dependent synthetase and ligase; KEGG- neu-NE1125 AMP-dependent synthetase and ligase (529 aa)
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (278 aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily (520 aa)
PFAM- Orn/DAP/Arg decarboxylase 2; KEGG- pol-Bpro_4782 Orn/DAP/Arg decarboxylase 2; Belongs to the Orn/Lys/Arg decarboxylase class-II family (400 aa)
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (417 aa)
KEGG- neu-NE2163 hypothetical protein (83 aa)
Two component, sigma54 specific, transcriptional regulator, Fis family protein; PFAM- response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART- AAA ATPase; KEGG- neu-NE1124 response regulatory protein (452 aa)
KEGG- neu-NE2161 esterase/lipase/thioesterase family active site (290 aa)
PFAM- glycosyl transferase, group 1; KEGG- neu-NE0794 glycosyl transferase group 1 (406 aa)
KEGG- neu-NE1799 hypothetical protein (359 aa)
Your Current Organism:
NCBI taxonomy Id: 335283 Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91