STRINGSTRING
xerC protein (Nitrosomonas eutropha) - STRING interaction network
"xerC" - Tyrosine recombinase XerC in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCTyrosine recombinase XerC (321 aa)    
Predicted Functional Partners:
Neut_1566
Hypothetical protein (233 aa)
   
        0.912
xerD
Tyrosine recombinase XerD (305 aa)
   
 
0.893
Neut_2435
Cobyrinic acid a,c-diamide synthase (254 aa)
   
   
  0.496
Neut_2488
Cell division protein FtsK (768 aa)
   
 
  0.474
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (278 aa)
   
        0.449
Neut_1742
Diaminopimelate decarboxylase (400 aa)
   
        0.438
Neut_1418
Orn/DAP/Arg decarboxylase 2 (411 aa)
   
        0.438
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine (417 aa)
   
        0.438
Neut_1387
Ornithine decarboxylase (390 aa)
   
        0.437
hslV
ATP-dependent protease peptidase subunit; Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery (173 aa)
              0.428
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha, N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha Koops et al. 2001, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (9%) [HD]