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xerC protein (Nitrosomonas eutropha) - STRING interaction network
"xerC" - TIGRFAM: tyrosine recombinase XerC in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
xerCTIGRFAM- tyrosine recombinase XerC; PFAM- phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG- neu-NE0338 phage integrase-phage integrase N-terminal SAM-like domain; Belongs to the ’phage’ integrase family. XerC subfamily (321 aa)    
Predicted Functional Partners:
Neut_1566
PFAM- protein of unknown function DUF484; KEGG- neu-NE0339 hypothetical protein (233 aa)
   
        0.916
Neut_1366
TIGRFAM- integron integrase; PFAM- phage integrase family protein; KEGG- dar-Daro_3427 integron integrase; Belongs to the ’phage’ integrase family (329 aa)
   
 
0.615
xerD
TIGRFAM- tyrosine recombinase XerD; PFAM- phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG- neu-NE1458 phage integrase-phage integrase N-terminal SAM-like domain (305 aa)
   
 
0.601
Neut_2488
DNA translocase FtsK; PFAM- cell divisionFtsK/SpoIIIE; SMART- AAA ATPase; KEGG- neu-NE1051 FtsK/SpoIIIE family-AAA ATPase superfamily (768 aa)
   
 
  0.551
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (459 aa)
           
  0.526
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (278 aa)
   
   
  0.435
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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