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mrdA protein (Nitrosomonas eutropha) - STRING interaction network
"mrdA" - Peptidoglycan D,D-transpeptidase MrdA in Nitrosomonas eutropha
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
mrdAPeptidoglycan D,D-transpeptidase MrdA; Catalyzes cross-linking of the peptidoglycan cell wall; Belongs to the transpeptidase family. MrdA subfamily (625 aa)    
Predicted Functional Partners:
mrdB
Peptidoglycan glycosyltransferase MrdB; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily (369 aa)
 
  0.996
Neut_0761
Penicillin-binding protein 6, Serine peptidase, MEROPS family S11; PFAM- beta-lactamase; peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG- neu-NE1485 D-alanyl-D-alanine carboxypeptidase 1 (S11) family; Belongs to the peptidase S11 family (380 aa)
 
  0.987
Neut_1591
Cell shape-determining protein MreC; Involved in formation and maintenance of cell shape (296 aa)
 
 
  0.986
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily (370 aa)
 
  0.956
Neut_1592
TIGRFAM- cell shape determining protein, MreB/Mrl family; PFAM- cell shape determining protein MreB/Mrl; KEGG- neu-NE2070 heat shock protein hsp70-cell shape determining protein MreB/Mrl (353 aa)
 
  0.954
Neut_0223
KEGG- neu-NE0053 D-Ala-D-Ala carboxypeptidase 3 (S13) family; TIGRFAM- D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; PFAM- peptidase S13, D-Ala-D-Ala carboxypeptidase C (475 aa)
   
 
  0.928
Neut_1590
PFAM- Rod shape-determining protein MreD; KEGG- neu-NE2068 possible rod shape-determining MreD transmembrane protein (183 aa)
   
   
  0.904
rlpA
Endolytic peptidoglycan transglycosylase RlpA; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides (317 aa)
 
   
  0.890
ftsI
Peptidoglycan D,D-transpeptidase FtsI; Catalyzes cross-linking of the peptidoglycan cell wall at the division septum (579 aa)
 
0.880
rlmH
Ribosomal RNA large subunit methyltransferase H; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family (155 aa)
 
   
  0.853
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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