• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
Neut_1621 protein (Nitrosomonas eutropha) - STRING interaction network
"Neut_1621" - PFAM: sigma-54 factor, interaction domain-containing protein in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Neut_1621PFAM- sigma-54 factor, interaction domain-containing protein; SMART- AAA ATPase; KEGG- gme-Gmet_0339 sigma54 specific transcriptional regulator with PAS sensor, fis family (366 aa)    
Predicted Functional Partners:
Neut_2303
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (487 aa)
 
     
  0.855
Neut_0219
Histidine kinase; KEGG- neu-NE0049 sensory transduction histidine kinase; TIGRFAM- PAS sensor protein; PFAM- response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold domain protein; SMART- PAS domain containing protein (1221 aa)
     
 
  0.753
Neut_1162
CheA signal transduction histidine kinases; PFAM- response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Hpt domain protein; KEGG- neu-NE1250 two-component hybrid sensor and regulator (1716 aa)
         
  0.739
Neut_0598
TIGRFAM- diguanylate cyclase; PFAM- GGDEF domain containing protein; KEGG- neu-NE0440 domain of unknown function, DUF9 (491 aa)
   
   
  0.688
Neut_1840
Multi-sensor signal transduction histidine kinase; TIGRFAM- PAS sensor protein; PFAM- ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation and phosphoacceptor region; PAS fold-3 domain protein; KEGG- neu-NE1738 sensory transduction histidine kinase (498 aa)
   
   
  0.565
Neut_0181
PFAM- adenylyl cyclase class-3/4/guanylyl cyclase; sterile alpha motif SAM protein; Sterile alpha motif homology 2; Tetratricopeptide TPR_4; SMART- Tetratricopeptide domain protein; KEGG- neu-NE0090 guanylate cyclase-TPR repeat-SAM domain (sterile alpha motif) (1131 aa)
           
  0.556
dinB
DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3’-5’ exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII (385 aa)
              0.405
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
Server load: low (10%) [HD]