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xerD protein (Nitrosomonas eutropha) - STRING interaction network
"xerD" - TIGRFAM: tyrosine recombinase XerD in Nitrosomonas eutropha
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDTIGRFAM- tyrosine recombinase XerD; PFAM- phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG- neu-NE1458 phage integrase-phage integrase N-terminal SAM-like domain (305 aa)    
Predicted Functional Partners:
Neut_2488
DNA translocase FtsK; PFAM- cell divisionFtsK/SpoIIIE; SMART- AAA ATPase; KEGG- neu-NE1051 FtsK/SpoIIIE family-AAA ATPase superfamily (768 aa)
 
 
 
  0.692
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (906 aa)
 
   
  0.637
Neut_0400
30S ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence (570 aa)
 
     
  0.624
xerC
TIGRFAM- tyrosine recombinase XerC; PFAM- phage integrase family protein; phage integrase domain protein SAM domain protein; KEGG- neu-NE0338 phage integrase-phage integrase N-terminal SAM-like domain; Belongs to the ’phage’ integrase family. XerC subfamily (321 aa)
   
 
0.601
Neut_2545
PFAM- UvrD/REP helicase; KEGG- fnu-FN0524 DNA helicase II; Belongs to the helicase family. UvrD subfamily (971 aa)
   
   
  0.592
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine (419 aa)
   
   
  0.586
Neut_0131
Exonuclease RecJ; TIGRFAM- single-stranded-DNA-specific exonuclease RecJ; PFAM- phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG- neu-NE0010 single-stranded-DNA-specific exonuclease (589 aa)
 
   
  0.583
Neut_1709
PFAM- cytochrome c assembly protein; KEGG- neu-NE1459 putative transmembrane protein (281 aa)
   
        0.579
tal
Transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 2 subfamily (364 aa)
         
  0.558
map
TIGRFAM- methionine aminopeptidase, type I; PFAM- peptidase M24; KEGG- neu-NE0275 methionine aminopeptidase (270 aa)
           
  0.535
Your Current Organism:
Nitrosomonas eutropha
NCBI taxonomy Id: 335283
Other names: N. eutropha C91, Nitrosomonas eutropha, Nitrosomonas eutropha C91, Nitrosomonas eutropha str. C91, Nitrosomonas eutropha strain C91
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